The gray-necked pika belongs to the subgenus <Conothoa>. The classification of this species is rather confusing. The reddish-brown gray-necked pika in Gaoligong Mountain was once regarded as a new species - Gaoligong pika (<Ochotona gaoligongensis>). Molecular biological research results show that it is the gray-necked pika. The gray-necked pika in the southern section of Gaoligong Mountain was once named as another subspecies (<O. forresti osgoodi>), and its black individuals were once named as a new species - black pika (<Ochotona nigritia>). Molecular biological research results show that this black pika belongs to the gray-necked pika. At the same time, some scientists believe that color variation in pikas is common.
This species is listed in the 2013 IUCN Red List of Threatened Species ver3.1—Vulnerable (VU).